ELLIS against Covid-19

Resource optimising real-time analysis of artifactious image sequences for the detection of nano-objects

ellis 22 April 2020 - 22 April 2020
22 April 2020 • 15:05 - 15:15

(TU Dortmund)

The comprehensive real-time detection of the Coronavirus SARS-CoV-2 is a fundamental challenge. The biosensor called PAMONO (for Plasmon Assisted Microscopy of Nano-sized Objects) could make a valuable contribution here. The sensor represents a viable technology for mobile real-time detection and quantitative analysis of viruses and virus-like particles. A mobile system that can detect viruses in real-time is urgently needed, due to the combination of virus emergence and evolution with increasing global travel and transport. It could be used for fast and reliable diagnoses in hospitals, airports, the open air, or other settings. The development of the sensor is part of the collaborative research center 876 funded by DFG (sfb876.tu-dortmund.de) and has been launched since 2010. The PAMONO-sensor permits the imaging of biological nano-vesicles (e.g. the Coronavirus) utilizing a Kretschmann’s scheme of plasmon excitation with an illumination of a gold sensor surface via a glass prism. The PAMONO sensor applies anti-bodies to bind the nano-sized viruses on a gold layer. The presence of viruses can be detected by the intensity change of the reflection of a laser beam. Characteristics of these binding events are spatiotemporal blob-like structures with very low signal-to-noise ratio, which indicate particle bindings and can be automatically analyzed with image processing methods. We capture the intensity of the reflected laser beams using a CCD camera, which result in a series of artifactious images. For the analysis of the images provided by the sensor, we have developed nanoparticle classification approaches based on deep neural network architectures. It is shown that the combination of the PAMONO sensor and the application of deep learning enables a real-time data processing to automatically detect and quantify biological particles. With the availability of anti-SARS-CoV-2 antibodies, the PAMONO-sensor could thus also be trained to detect the Coronavirus. For more technical details, we refer the reader to our survey paper by Shpacovitch, et al. http://dx.doi.org/10.3390/s17020244

Video:

Speaker(s):

Thumb ticker katharina morik
(TU Dortmund)